(lnd_init_mct) :CLM land model initialization dtime = 1800 ctsm5.1.dev043-6-g5ae72ca Attempting to initialize the land model ..... Attempting to initialize run control settings ..... Read in clm_inparm namelist from: lnd_in rooting_profile settings: rooting_profile_method_water = 1 (rooting_profile_varindex_water = 1 ) rooting_profile_method_carbon = 1 (rooting_profile_varindex_carbon = 2 ) soilwater_movement settings: soilwater_movement_method = 1 upper_boundary_condition = 1 lower_boundary_condition = 2 use_bedrock = T dtmin = 60.0000000000000 verySmall = 1.000000000000000E-008 xTolerUpper = 0.100000000000000 xTolerLower = 1.000000000000000E-002 expensive = 42 inexpensive = 1 flux_calculation = 1 soil_resis settings: soil_resis_method = 1 Read in canopyfluxes_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 96 canopyfluxes_inparm settings: &CANOPYFLUXES_INPARM USE_UNDERCANOPY_STABILITY = F, USE_BIOMASS_HEAT_STORAGE = T, ITMAX_CANOPY_FLUXES = 40 / Read in clm_CanopyHydrology_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 96 canopyhydrology settings: interception_fraction = 1.00000000000000 maximum_leaf_wetted_fraction = 5.000000000000000E-002 use_clm5_fpi = T Read in surfacealbedo_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 96 surfacealbedo_inparm settings &SURFACEALBEDO_INPARM SNOWVEG_AFFECTS_RADIATION = T / Read in clm_SnowHydrology_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 96 SnowHydrology settings: &CLM_SNOWHYDROLOGY_INPARM WIND_DEPENDENT_SNOW_DENSITY = T, SNOW_OVERBURDEN_COMPACTION_METHOD = Vionnet2012 , LOTMP_SNOWDENSITY_METHOD = Slater2017 , UPPLIM_DESTRUCT_METAMORPH = 175.000000000000 , OVERBURDEN_COMPRESS_TFACTOR = 8.000000000000000E-002, MIN_WIND_SNOWCOMPACT = 5.00000000000000 , RESET_SNOW = F, RESET_SNOW_GLC = F, RESET_SNOW_GLC_ELA = 1000000000.00000 , SNOW_DZMIN_1 = 1.000000000000000E-002, SNOW_DZMAX_L_1 = 3.000000000000000E-002, SNOW_DZMAX_U_1 = 2.000000000000000E-002, SNOW_DZMIN_2 = 1.500000000000000E-002, SNOW_DZMAX_L_2 = 7.000000000000001E-002, SNOW_DZMAX_U_2 = 5.000000000000000E-002 / Read in clmu_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 96 urban air conditioning/heating and wasteheat = ON_WASTEHEAT urban traffic flux = F Read in clm_humanindex_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 96 Read in luna namelist (OPNFIL): Successfully opened file lnd_in on unit= 96 luna settings: &LUNA JMAXB1 = 0.170000000000000 / Read in soilhydrology_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 96 soilhydrology_inparm settings: &SOILHYDROLOGY_INPARM BASEFLOW_SCALAR = 1.000000000000000E-003 / Successfully initialized run control settings Attempting to read maxsoil_patches and numcft from the surface data ..... (GETFIL): attempting to find local file surfdata_SE-Nor_simyr2020_corr.nc (GETFIL): using /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc Opened existing file /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc 133 Successfully read maxsoil_patches and numcft from the surface data soil_layerstruct_predefined varpar 20SL_8.5m soil_layerstruct_userdefined varpar -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 nlevsoi, nlevgrnd varpar 20 25 CLM varpar subsurface discretization levels nlevsoi = 20 nlevgrnd = 25 nlevdecomp = 1 nlevdecomp_full = 1 nlevlak = 10 define run: source = Community Terrestrial Systems Model model_version = ctsm5.1.dev043-6-g5ae72ca run type = initial case title = UNSET username = ecaas hostname = saga process control parameters: use_lch4 = F use_nitrif_denitrif = F use_vertsoilc = F use_extralakelayers = F use_vichydro = F use_century_decomp = F use_cn = F use_cndv = F use_crop = F use_fertilizer = F use_grainproduct = F use_ozone = F use_snicar_frc = F use_vancouver = F use_mexicocity = F use_noio = F use_SSRE = F input data files: PFT physiology and parameters file = /cluster/work/users/ecaas/inputdata/lnd/clm2/paramdata/ctsm51_params.c210528.nc surface data = /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc land frac data = /cluster/work/users/ecaas/inputdata/share/domains/SE-Nor/domain.lnd.SE-Nor_SE-N or.210901.nc Number of ACTIVE PFTS (0 means input pft data NOT collapsed to n_dom_pfts) = 0 Number of ACTIVE LANDUNITS (0 means input landunit data NOT collapsed to n_d om_landunits) = 0 Collapse urban landunits; done before collapsing all landunits to n_dom_land units; .false. means do nothing i.e. keep all the urban landunits, though n_dom _landunits may still remove them = F Threshold above which the model keeps the soil landunit = 0.000000000000000E+000 Threshold above which the model keeps the crop landunit = 0.000000000000000E+000 Threshold above which the model keeps the glacier landunit = 0.000000000000000E+000 Threshold above which the model keeps the lake landunit = 0.000000000000000E+000 Threshold above which the model keeps the wetland landunit = 0.000000000000000E+000 Threshold above which the model keeps the urban landunits = 0.000000000000000E+000 snow optical properties file = /cluster/work/users/ecaas/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090 915.nc snow aging parameters file = /cluster/work/users/ecaas/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_ c070416.nc Number of snow layers = 12 Max snow depth (mm) = 10000.0000000000 glc number of elevation classes = 10 glc CLM glacier areas and topography will NOT evolve dynamically glc snow persistence max days = 0 initial data created by model (cold start) atmospheric forcing data is from cesm atm model Restart parameters: restart pointer file directory = . restart pointer file name = rpointer.lnd model physics parameters: CO2 volume mixing ratio (umol/mol) = 411.000000000000 land-ice albedos (unitless 0-1) = 0.500000000000000 0.300000000000000 pre-defined soil layer structure = 20SL_8.5m user-defined soil layer structure = -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 user-defined number of soil layers = -9999999 plant hydraulic stress = T dynamic roots = F nsegspc = 35 perchroot (plant water stress based on unfrozen layers only) = F perchroot (plant water stress based on time-integrated active layer only) = F Lake Model Namelists: Increased mixing relative to Hostetler wind-driven eddy expression will be used for deep lakes exceeding depth 25.0000000000000 by a factor of 10.0000000000000 . Albedo over melting lakes will approach values (visible, NIR): 0.100000000000000 0.100000000000000 as compared with 0.60, 0.40 for cold frozen lakes with no snow. plant nitrogen model namelists: use_flexibleCN = F use_luna = T ED/FATES: use_fates = F dynamic_subgrid settings: &DYNAMIC_SUBGRID FLANDUSE_TIMESERIES = , DO_TRANSIENT_PFTS = F, DO_TRANSIENT_CROPS = F, DO_TRANSIENT_LAKES = F, DO_HARVEST = F, RESET_DYNBAL_BASELINES = F, FOR_TESTING_ALLOW_NON_ANNUAL_CHANGES = F, FOR_TESTING_ZERO_DYNBAL_FLUXES = F / Attempting to read global land mask from /cluster/work/users/ecaas/inputdata/share/domains/SE-Nor/domain.lnd.SE-Nor_SE-N or.210901.nc (GETFIL): attempting to find local file domain.lnd.SE-Nor_SE-Nor.210901.nc (GETFIL): using /cluster/work/users/ecaas/inputdata/share/domains/SE-Nor/domain.lnd.SE-Nor_SE-N or.210901.nc Opened existing file /cluster/work/users/ecaas/inputdata/share/domains/SE-Nor/domain.lnd.SE-Nor_SE-N or.210901.nc 134 lat/lon grid flag (isgrid2d) is F ncd_inqvid: variable LANDMASK is not on dataset decomp precompute numg,nclumps,seglen1,avg_seglen,nsegspc= 1 1 T 1.000000 1.000000 Surface Grid Characteristics longitude points = 1 latitude points = 1 total number of land gridcells = 1 Decomposition Characteristics clumps per process = 1 gsMap Characteristics lnd gsmap glo num of segs = 1 Attempting to read ldomain from /cluster/work/users/ecaas/inputdata/share/domains/SE-Nor/domain.lnd.SE-Nor_SE-N or.210901.nc (GETFIL): attempting to find local file domain.lnd.SE-Nor_SE-Nor.210901.nc (GETFIL): using /cluster/work/users/ecaas/inputdata/share/domains/SE-Nor/domain.lnd.SE-Nor_SE-N or.210901.nc Opened existing file /cluster/work/users/ecaas/inputdata/share/domains/SE-Nor/domain.lnd.SE-Nor_SE-N or.210901.nc 135 domain_check set = domain_set domain_check decomped = F domain_check ns = 1 domain_check ni,nj = 1 1 domain_check nbeg,nend = 1 1 domain_check lonc = 17.4795000000000 17.4795000000000 domain_check latc = 60.0865000000000 60.0865000000000 domain_check mask = 1 1 domain_check frac = 1.00000000000000 1.00000000000000 domain_check area = 0.616622984824906 0.616622984824906 domain_check pftm = -9999 -9999 Attempting to read GLACIER_REGION... (GETFIL): attempting to find local file surfdata_SE-Nor_simyr2020_corr.nc (GETFIL): using /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc Opened existing file /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc 136 (OPNFIL): Successfully opened file lnd_in on unit= 96 clm_glacier_behavior settings: &CLM_GLACIER_BEHAVIOR GLACIER_REGION_BEHAVIOR = single_at_atm_topo virtual virtual multiple UNSET UNSET UNSET UNSET UNSET UNSET UNSET , GLACIER_REGION_MELT_BEHAVIOR = remains_in_place replaced_by_ice replaced_by_ice re placed_by_ice UNSET UNSET UNSET UNSET UNSET UNSET UNSET , GLACIER_REGION_ICE_RUNOFF_BEHAVIOR = melted melted remains_ice remains_ice UNSET UNSET UNSET UNSET UNSET UNSET UNSET / Reading in urban input data from fsurdat file ... (GETFIL): attempting to find local file surfdata_SE-Nor_simyr2020_corr.nc (GETFIL): using /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc Opened existing file /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc 137 UrbanInput /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc Sucessfully read urban input data Attempting to read PFT physiological data ..... (GETFIL): attempting to find local file ctsm51_params.c210528.nc (GETFIL): using /cluster/work/users/ecaas/inputdata/lnd/clm2/paramdata/ctsm51_params.c210528.nc Opened existing file /cluster/work/users/ecaas/inputdata/lnd/clm2/paramdata/ctsm51_params.c210528.nc 138 Successfully read PFT physiological data Attempting to read surface boundary data ..... (GETFIL): attempting to find local file surfdata_SE-Nor_simyr2020_corr.nc (GETFIL): using /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc Opened existing file /cluster/work/users/ecaas/inputdata/lnd/clm2/surfdata_map/SE-Nor/surfdata_SE-No r_simyr2020_corr.nc 139 check_var: variable xc is not on dataset surfrd_get_data lon_var = LONGXY lat_var =LATIXY ncd_inqvid: variable irrigation_method is not on dataset WARNING: irrigation_method NOT on surfdata file; using default surfrd_veg_all ERROR: sum of wt_cft not 1.00000000000000 at nl= 1 sum is: 0.000000000000000E+000 ENDRUN: ERROR: ERROR in surfrdUtilsMod.F90 at line 80